Saint-Leandre, B. Christopher, C., and M.T. Levine (2020) Adaptive evolution of an essential telomere protein restricts telomeric retrotransposons. eLife 9:e60987.

Saint-Leandre, B., Nguyen, SB., and M.T. Levine (2019) Diversification and collapse of a telomere elongation mechanism. Genome Research: 29: 920-931.

Helleu, Q. and M.T. Levine (2018) Recurrent amplification of the Heterochromatin Protein 1 (HP1) gene family across Diptera. Molecular Biology and Evolution. 35: 2375-2389                                     

Lee, Y.C.G. and M.T. Levine (2017) Germline genome protection on an evolutionary treadmill. Developmental Cell: 43:1-3.                                                   

Lee, Y.C.G., Leek, C. and M.T. Levine (2017) Recurrent innovation at genes required for telomere integrity in Drosophila. Molecular Biology and Evolution: 34:467-482.

Levine, M.T., Vander Wende, H., Hseih, E., Baker, E., and H.S. Malik (2016) Recurrent gene duplication diversifies genome defense repertoire in Drosophila. Molecular Biology and Evolution 33: 1641-53.

Levine, M.T., Vander Wende, H., and H.S. Malik (2015) Mitotic fidelity requires transgenerational action of a testis-restricted HP1. eLife 4: e07378.

Levine, M.T. and H.S. Malik (2013) A rapidly evolving genomic toolkit of Drosophila heterochromatin. Fly 7: 137-141.

Levine, M.T., McCoy, C. Vermaak. D., Lee Y.C.G, Hiatt, M.A., Matsen, F.A., and H.S. Malik (2012) Phylogenomic analysis reveals dynamic evolutionary history of the Drosophila Heterochromatin Protein 1 (HP1) gene family.  PLoS Genetics 8(6): e1002729.

Moyle, L.C., Levine, M.T., Stanton, M.L. and J.W. Wright (2012) Hybrid sterility over tens of meters between ecotypes adapted to serpentine and non-serpentine soils. Evolutionary Biology 39: 207-218.

Levine, M.T. and H.S. Malik (2011) Learning to protect your genome on the fly. Cell 147: 1440-1441. (Preview)

Levine, M.T., Eckert, M., and D.J. Begun (2011) Whole genome expression plasticity across tropical and temperate Drosophila melanogaster populations from eastern Australia. Molecular Biology and Evolution 28: 249–256.

Levine, M.T. and D.J. Begun (2008) Evidence of spatially varying selection at four chromatin-remodeling loci in Drosophila melanogaster. Genetics 179: 455-473.

Turner, L.T., Levine, M.T., and D.J.Begun (2008) Genomic analysis of adaptive differentiation in Drosophila melanogaster. Genetics 179: 475-485.

Levine, M.T., Holloway, A.K., Arshad, U., and D.J. Begun (2007) Pervasive and largely lineage-specific adaptive protein evolution in the dosage compensation complex of Drosophila melanogaster. Genetics 177: 1959–1962.

Levine, M.T. and D.J. Begun (2007) Comparative Population Genetics of the Immunity Gene, Relish: Is Adaptive Evolution Idiosyncratic? PLoS ONE 2(5): e442.

Levine, M.T., C. D. Jones, A. D. Kern, H. A. Lindfors, and D. J. Begun (2006) Novel genes derived from noncoding DNA in Drosophila melanogaster are frequently X-linked and exhibit testis-biased expression. Proceedings of the National Academy of Sciences USA 103: 9935-9939.

Levine, M.T. and K.N. Paige (2004) Direct and indirect effects of drought on compensation in scarlet gilia. Ecology 85: 3185–3191.

Levine, M.T., and I.C. Feller (2003) Effects of forest age and disturbance on population persistence in the understory herb, Arisaema triphyllum (Araceae). Plant Ecology 172: 73-82.